Installation¶

Dependencies¶

• RATT
• Prokka
• EMBOSS (seqret)
• Biopython
• CD-HIT
• MCL
• NCBI-BLAST
• eggnog-mapper

All dependencies are available within the environment.yml within a conda environment

How to install¶

The easiest way to install hybran is through the conda package manager:

conda install -c bioconda hybran

Installation from Source / Development Installation¶

• Download and extract the latest release.

• Install the dependencies using miniconda (or manually)

# From the hybran directory you downloaded, set up the conda environment with the dependencies
conda env create -n hybran-dev -f environment.yml
conda activate hybran-dev

• Install hybran

pip install --editable .

If you run into any trouble, please let us know over at our issues page.